HARNESS Software Catalog

5 Item(s)

  1. AutoPtx
    AutoPtx is a set of simple scripts and robust mask images to run FSL probabilistic tractography in an unsupervised manner.
  2. CHeBA NiL Software (CNS)
    CHeBA NiL Software (CNS) is a software package for processing neuroimaging data.
  3. ExploreASL
    ExploreASL is a pipeline and toolbox for image processing and statistics of arterial spin labeling perfusion MR images. It is designed as a multi-OS, open source, collaborative framework that facilitates cross-pollination between image processing method developers and clinical investigators. The software provides a complete head-to-tail approach that runs fully automatically, encompassing all necessary tasks from data import and structural segmentation, registration and normalization, up to CBF quantification. In addition, the software package includes and quality control (QC) procedures and region-of-interest (ROI) as well as voxel-wise analysis on the extracted data. To-date, ExploreASL has been used for processing ~10000 ASL datasets from all major MRI vendors and ASL sequences, and a variety of patient populations, representing ~30 studies. The ultimate goal of Explore ASL is to combine data from multiple studies to identify disease related perfusion patterns that may prove crucial in using ASL as a diagnostic took and enhance our understanding of the interplay of perfusion and structural changes in neurodegenerative pathophysiology.
  4. FSL-BIANCA
    BIANCA (Brain Intensity AbNormality Classification Algorithm): FSL tool for automated segmentation of white matter hyperintensities
  5. White matter lesion segmentation by k nearest neighbor classification with tissue type priors (kNN-TTP)
    k Nearest Neighbor classification with tissue type priors is used to segment white matter hyperintensities on brain MRI.

5 Item(s)